The genus Microctenopoma consists of 12 described species.
Microctenopoma ansorgii (Boulenger, 1912) Ornate ctenopoma
Microctenopoma congicum (Boulenger, 1887) Congo ctenopoma
Microctenopoma damasi (Poll & Damas, 1939)
Microctenopoma fasciolatum (Boulenger, 1899) Banded ctenopoma
Microctenopoma intermedium (Pellegrin, 1920)
Microctenopoma lineatum (Nichols, 1923)
Microctenopoma milleri (Norris & Douglas, 1991)
Microctenopoma nanum (Günther, 1896) Dwarf ctenopoma
Microctenopoma nigricans (Norris, 1995)
Microctenopoma ocellifer (Nichols, 1928)
Microctenopoma pekkolai (Rendahl, 1935)
Microctenopoma uelense Norris & Douglas, 1995)
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